TSS: Rfhg 36248.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000653932.1:114 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=dELS | |ccre_category=dELS | ||
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|nearest_promoter_id=NR_039638 | |nearest_promoter_id=NR_039638 | ||
|nearest_refseq=NR_039638 | |nearest_refseq=NR_039638 | ||
|nearest_transcripts= | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 11:12, 12 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D3218982,EH38E2058146) |
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| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -381730 |
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| Nearest PromoterID: | NR_039638 |
| Entrez ID: | 100616305 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_039638 |
| Nearest Ensembl: | ENSG00000266808 |
| Gene Name: | MIR548AE1 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.481481 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |