TSS: Rfhg 3659.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000426559.6:0 ENST00000455785.7:0 ENST00000465604.1:0 ENST00000580971.1:0 NM_001145454.3:0 NM_005563.4:0 NR_037481.1:0 AK303692:0 J04991:0 X53305:0 Z11566:0 AK054594:0 AB209282:0 BX647885:0 BC014353:0 BC082228:0 AK311801:0 D28428:0 LG052513:0 LY498382:0 LY499272:0 LY500624:0 LZ238643:0 MS869543:0 MS880587:0 MA806141:0 MA822561:0 LY616407:0 MB472898:0 LF137987:0 LF160085:0 LF162952:0 LF953704:0 LG006049:0 LG053745:0 LG240984:0 LP896702:0 LQ070663:0 LQ724413:0 LV471069:0 LY498159:0 LY498994:0 LY500438:0 LZ238392:0 MA405387:0 MA644164:0 MA732048:0 MP014953:0 MS869357:0 MS880309:0 LY498595:0 LY499559:0 LY500816:0 LZ238910:0 MS869735:0 MS880874:0 MA801217:0 MA805864:0 MA806418:0 MA822225:0 MP129759:0 MP162682:0 MA822894:0 LY616156:0 LY616674:0 MB406578:0 MB406974:0 MB407370:0 MB472662:0 MB473150:0 HM005502:-10 ENST00000399728.5:246 NM_203401.2:354 NM_203399.2:-388 ENST00000357865.6:-499
|annotation=promoter-TSS (NR_037481)
|annotation=promoter-TSS (NR_037481)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_037481
|nearest_promoter_id=NR_037481
|nearest_refseq=NR_037481
|nearest_refseq=NR_037481
|nearest_transcripts=HM005502:-10 ENST00000399728.5:246 NM_203401.2:354 NM_203399.2:-388 ENST00000357865.6:-499
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000426559.6 ENST00000455785.7 ENST00000465604.1 ENST00000580971.1 AK303692 J04991 X53305 Z11566 AK054594 AB209282 BX647885 BC014353 BC082228 AK311801 D28428
|transcript_name=ENST00000426559.6 ENST00000455785.7 ENST00000465604.1 ENST00000580971.1 NM_001145454.3 NM_005563.4 NR_037481.1 AK303692 J04991 X53305 Z11566 AK054594 AB209282 BX647885 BC014353 BC082228 AK311801 D28428 LG052513 LY498382 LY499272 LY500624 LZ238643 MS869543 MS880587 MA806141 MA822561 LY616407 MB472898 LF137987 LF160085 LF162952 LF953704 LG006049 LG053745 LG240984 LP896702 LQ070663 LQ724413 LV471069 LY498159 LY498994 LY500438 LZ238392 MA405387 MA644164 MA732048 MP014953 MS869357 MS880309 LY498595 LY499559 LY500816 LZ238910 MS869735 MS880874 MA801217 MA805864 MA806418 MA822225 MP129759 MP162682 MA822894 LY616156 LY616674 MB406578 MB406974 MB407370 MB472662 MB473150
|tss_cluster_detected=12
|tss_cluster_detected=12
|tss_id=rfhg_3659.1
|tss_id=rfhg_3659.1

Revision as of 11:18, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_3659.1
TSS ID(Version3):hg_11121.1
hg_11120.1
hg_11122.1
Species:human
Chr:chr1
Start:25906399
End:25906492
Strand:-
Source datasetsFANTOM5|PRJNA615891|PRJNA4843412|DRA013844|PRJNA401781
|PRJNA548673|PRJNA597322|PRJDB5282
ProtocolCAGE|SLIC_CAGE|NETCAGE|RAMPAGE|oligo_capping|ReCappable-seq
|TIF-seq2|STRIPE-seq|C1CAGE
TSS cluster detected*12

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2141346,EH38E1330009)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000426559.6:0
ENST00000455785.7:0
ENST00000465604.1:0
ENST00000580971.1:0
NM_001145454.3:0
NM_005563.4:0
NR_037481.1:0
AK303692:0
J04991:0
X53305:0
Z11566:0
AK054594:0
AB209282:0
BX647885:0
BC014353:0
BC082228:0
AK311801:0
D28428:0
LG052513:0
LY498382:0
LY499272:0
LY500624:0
LZ238643:0
MS869543:0
MS880587:0
MA806141:0
MA822561:0
LY616407:0
MB472898:0
LF137987:0
LF160085:0
LF162952:0
LF953704:0
LG006049:0
LG053745:0
LG240984:0
LP896702:0
LQ070663:0
LQ724413:0
LV471069:0
LY498159:0
LY498994:0
LY500438:0
LZ238392:0
MA405387:0
MA644164:0
MA732048:0
MP014953:0
MS869357:0
MS880309:0
LY498595:0
LY499559:0
LY500816:0
LZ238910:0
MS869735:0
MS880874:0
MA801217:0
MA805864:0
MA806418:0
MA822225:0
MP129759:0
MP162682:0
MA822894:0
LY616156:0
LY616674:0
MB406578:0
MB406974:0
MB407370:0
MB472662:0
MB473150:0
GeneID:100500808 3925
HGNC/MGI_ID:HGNC:38911 HGNC:6510
UniProt_ID:A0A140VJW2 P16949 Q59G27 Q96CE4
Nearer transcript ids and distances:
  • HM005502:-10
  • ENST00000399728.5:246
  • NM_203401.2:354
  • NM_203399.2:-388
  • ENST00000357865.6:-499
view more...
Gene_name:MIR3917
Gene_symbol:MIR3917 STMN1
Gene_synonyms:FLJ32206 Lag OP18 PP17 PP19 PR22 SMN hsa-mir-3917
Gene_source:HGNC:38911 HGNC:6510



TATA-Box annotation

Distance to TSS:9
Nearest PromoterID:NR_037481
Entrez ID:100500808
Nearest Unigene:
Nearest Refseq:NR_037481
Nearest Ensembl:ENSG00000283938
Gene Name:MIR3917
Gene Alias:mir-3917
Gene Type:ncRNA
CpG%:0.118280
GC%:0.670213
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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