TSS: Rfhg 3674.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NM_000437
|nearest_promoter_id=NM_000437
|nearest_refseq=NM_000437
|nearest_refseq=NM_000437
|nearest_transcripts=
|nearest_unigene=Hs.477083
|nearest_unigene=Hs.477083
|peak_score=1
|peak_score=1

Revision as of 11:21, 12 November 2024

Basic information about the TSS


TSS ID:rfhg_3674.1
Species:human
Chr:chr1
Start:26004606
End:26004620
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS,CTCF-bound (EH38D2141456,EH38E1330098)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:PAFAH2
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-6550
    Nearest PromoterID:NM_000437
    Entrez ID:5051
    Nearest Unigene:Hs.477083
    Nearest Refseq:NM_000437
    Nearest Ensembl:ENSG00000158006
    Gene Name:PAFAH2
    Gene Alias:HSD-PLA2
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.533333
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):