TSS: Rfhg 37955.1: Difference between revisions

Revision as of 11:45, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_37955.1
Species:	human
Chr:	chr2

Start:	208163589
End:	208163592
Strand:	-

Source datasets

FANTOM5|RAMPAGE

Protocol

CAGE|RAMPAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000304502.5:0 NM_014617.4:0
GeneID:	1418
HGNC/MGI_ID:	HGNC:2408
UniProt_ID:	A0A0S2A4T3
Nearer transcript ids and distances:	KT001516:17 EF426311:24 BC114456:-50 KJ901359:270 view more...

Gene_name:	CRYGA
Gene_symbol:	CRYGA
Gene_synonyms:	CRY-g-A CRYG5
Gene_source:	HGNC:2408

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_014617
Entrez ID:	1418
Nearest Unigene:	Hs.122566
Nearest Refseq:	NM_014617
Nearest Ensembl:	ENSG00000168582
Gene Name:	CRYGA
Gene Alias:	CRY-g-A\|CRYG1\|CRYG5
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.250000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000304502.5:0 NM_014617.4:0 KT001516:17 EF426311:24 BC114456:-50 KJ901359:270
 |annotation=promoter-TSS (NM_014617)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_014617
 |nearest_refseq=NM_014617
+|nearest_transcripts=KT001516:17 EF426311:24 BC114456:-50 KJ901359:270
 |nearest_unigene=Hs.122566
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000304502.5
+|transcript_name=ENST00000304502.5 NM_014617.4
 |tss_cluster_detected=2
 |tss_id=rfhg_37955.1