TSS: Rfhg 40610.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000305208.10:0 NM_000463.3:0 AK290834:0 BC128414:0 BC128415:0 M57899:0 LF205292:-2 MA440869:-2 ENST00000360418.4:14 DQ364247:14 AY435136:14 JQ686667:14 JQ699637:14 JQ699638:14 JQ699639:14 JQ699640:14 JQ699641:14 JQ699642:14 JQ699643:14 JQ699644:14 JQ699645:14 JQ699646:14 JQ699647:14 JQ699649:14 JQ699650:14 LF318914:275 MA554491:275 | |||
|annotation=promoter-TSS (NM_000463) | |annotation=promoter-TSS (NM_000463) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_000463 | |nearest_promoter_id=NM_000463 | ||
|nearest_refseq=NM_000463 | |nearest_refseq=NM_000463 | ||
|nearest_transcripts=LF205292:-2 MA440869:-2 ENST00000360418.4:14 DQ364247:14 AY435136:14 JQ686667:14 JQ699637:14 JQ699638:14 JQ699639:14 JQ699640:14 JQ699641:14 JQ699642:14 JQ699643:14 JQ699644:14 JQ699645:14 JQ699646:14 JQ699647:14 JQ699649:14 JQ699650:14 LF318914:275 MA554491:275 | |||
|nearest_unigene=Hs.554822 | |nearest_unigene=Hs.554822 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000305208.10 AK290834 BC128414 BC128415 M57899 | |transcript_name=ENST00000305208.10 NM_000463.3 AK290834 BC128414 BC128415 M57899 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_40610.1 | |tss_id=rfhg_40610.1 | ||
Revision as of 12:34, 12 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D3258812,EH38E2084549) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NM_000463 |
| Entrez ID: | 54658 |
| Nearest Unigene: | Hs.554822 |
| Nearest Refseq: | NM_000463 |
| Nearest Ensembl: | ENSG00000241635 |
| Gene Name: | UGT1A1 |
| Gene Alias: | BILIQTL1|GNT1|HUG-BR1|UDPGT|UDPGT 1-1|UGT1|UGT1A |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "LF205292:-2 MA440869:-2 ENST00000360418.4:14 DQ364247:14 AY435136:14 JQ686667:14 JQ699637:14 JQ699638:14 JQ699639:14 JQ699640:14 JQ699641:14 JQ699642:14 JQ699643:14 JQ699644:14 JQ699645:14 JQ699646:14 JQ699647:14 JQ699649:14 JQ699650:14 LF318914:275 MA554491:275" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.