TSS: Rfhg 4272.1: Difference between revisions

Revision as of 13:12, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_4272.1
Species:	human
Chr:	chr1

Start:	28581049
End:	28581052
Strand:	-

Source datasets

FANTOM5|DBTSS

Protocol

CAGE|TSS-seq

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2144175,EH38E1332406)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_003035.1:-1 AJ609433:-1
GeneID:	692073
HGNC/MGI_ID:	HGNC:32605
UniProt_ID:
Nearer transcript ids and distances:	ENST00000628458.1:-2 ENST00000384342.2:-4 ENST00000464612.5:39 BC107730:204 AY277594:451 view more...

Gene_name:	SNORA16A
Gene_symbol:	SNORA16A
Gene_synonyms:	ACA16
Gene_source:	HGNC:32605

TATA-Box annotation

Distance to TSS:	3
Nearest PromoterID:	NR_003035
Entrez ID:	692073
Nearest Unigene:	Hs.632377
Nearest Refseq:	NR_003035
Nearest Ensembl:	ENSG00000280498
Gene Name:	SNORA16A
Gene Alias:	ACA16
Gene Type:	snoRNA
CpG%:	0.000000
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_003035.1:-1 AJ609433:-1 ENST00000628458.1:-2 ENST00000384342.2:-4 ENST00000464612.5:39 BC107730:204 AY277594:451
 |annotation=promoter-TSS (NR_002976)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_003035
 |nearest_refseq=NR_003035
+|nearest_transcripts=ENST00000628458.1:-2 ENST00000384342.2:-4 ENST00000464612.5:39 BC107730:204 AY277594:451
 |nearest_unigene=Hs.632377
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=AJ609433
+|transcript_name=NR_003035.1 AJ609433
 |tss_cluster_detected=2
 |tss_id=rfhg_4272.1