TSS: Rfhg 43409.1: Difference between revisions

Revision as of 13:24, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_43409.1
Species:	human
Chr:	chr3

Start:	27722123
End:	27722127
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3406719,EH38E2187441)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF378841:-121 MA614418:-121
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC131712:-167 AB031038:-167 LP880234:-167 LP882063:-167 LQ882854:-167 MB143792:-167 MB423116:-167 MP584504:-167 AB463608:-168 BC037568:-185 ENST00000449599.4:-196 NM_001278182.2:-196 NM_005442.4:-196 LF378840:-353 MA614417:-353 ENST00000295743.8:-371 LF378839:-465 MA614416:-465 view more...

Gene_name:	EOMES
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	198
Nearest PromoterID:	NM_005442
Entrez ID:	8320
Nearest Unigene:	Hs.591663
Nearest Refseq:	NM_005442
Nearest Ensembl:	ENSG00000163508
Gene Name:	EOMES
Gene Alias:	TBR2
Gene Type:	protein-coding
CpG%:	0.250000
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "BC131712:-167 AB031038:-167 LP880234:-167 LP882063:-167 LQ882854:-167 MB143792:-167 MB423116:-167 MP584504:-167 AB463608:-168 BC037568:-185 ENST00000449599.4:-196 NM_001278182.2:-196 NM_005442.4:-196 LF378840:-353 MA614417:-353 ENST00000295743.8:-371 LF378839:-465 MA614416:-465" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF378841:-121 MA614418:-121 BC131712:-167 AB031038:-167 LP880234:-167 LP882063:-167 LQ882854:-167 MB143792:-167 MB423116:-167 MP584504:-167 AB463608:-168 BC037568:-185 ENST00000449599.4:-196 NM_001278182.2:-196 NM_005442.4:-196 LF378840:-353 MA614417:-353 ENST00000295743.8:-371 LF378839:-465 MA614416:-465
 |annotation=exon (NM_001278182, exon 1 of 6)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005442
 |nearest_refseq=NM_005442
+|nearest_transcripts=BC131712:-167 AB031038:-167 LP880234:-167 LP882063:-167 LQ882854:-167 MB143792:-167 MB423116:-167 MP584504:-167 AB463608:-168 BC037568:-185 ENST00000449599.4:-196 NM_001278182.2:-196 NM_005442.4:-196 LF378840:-353 MA614417:-353 ENST00000295743.8:-371 LF378839:-465 MA614416:-465
 |nearest_unigene=Hs.591663
 |peak_score=1