TSS: Rfhg 44989.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF208647:0 MA444224:0 ENST00000296435.2:10 GQ891396:35 BC055089:135 X89658:145 ENST00000652295.2:158 NM_004345.5:158 U19970:160 CU691114:172 HQ447663:172 KJ890819:172 AB590666:173 AY251531:173 Z38026:173 CR457083:175 CR541961:175 AY162210:175
|annotation=promoter-TSS (NM_004345)
|annotation=promoter-TSS (NM_004345)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_004345
|nearest_promoter_id=NM_004345
|nearest_refseq=NM_004345
|nearest_refseq=NM_004345
|nearest_transcripts=ENST00000296435.2:10 GQ891396:35 BC055089:135 X89658:145 ENST00000652295.2:158 NM_004345.5:158 U19970:160 CU691114:172 HQ447663:172 KJ890819:172 AB590666:173 AY251531:173 Z38026:173 CR457083:175 CR541961:175 AY162210:175
|nearest_unigene=Hs.51120
|nearest_unigene=Hs.51120
|peak_score=1
|peak_score=1

Revision as of 13:54, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_44989.1
Species:human
Chr:chr3
Start:48223327
End:48223337
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3424125,EH38E2199397)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF208647:0
MA444224:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000296435.2:10
  • GQ891396:35
  • BC055089:135
  • X89658:145
  • ENST00000652295.2:158
  • NM_004345.5:158
  • U19970:160
  • CU691114:172
  • HQ447663:172
  • KJ890819:172
  • AB590666:173
  • AY251531:173
  • Z38026:173
  • CR457083:175
  • CR541961:175
  • AY162210:175
view more...
Gene_name:CAMP
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-163
Nearest PromoterID:NM_004345
Entrez ID:820
Nearest Unigene:Hs.51120
Nearest Refseq:NM_004345
Nearest Ensembl:ENSG00000164047
Gene Name:CAMP
Gene Alias:CAP-18|CAP18|CRAMP|FALL-39|FALL39|HSD26|LL37
Gene Type:protein-coding
CpG%:0.000000
GC%:0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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