TSS: Rfhg 49732.1: Difference between revisions

Revision as of 15:22, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_49732.1
Species:	human
Chr:	chr3

Start:	126524268
End:	126524276
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3480460,EH38E2235039)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ900369:56
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000615522.1:57 BC103895:57 BC103896:57 BC103897:57 AY120869:57 ENST00000319340.7:-113 NM_152889.3:-113 view more...

Gene_name:	CHST13
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	117
Nearest PromoterID:	NM_152889
Entrez ID:	166012
Nearest Unigene:	Hs.292375
Nearest Refseq:	NM_152889
Nearest Ensembl:	ENSG00000180767
Gene Name:	CHST13
Gene Alias:	C4ST3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.777778
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=KJ900369:56 ENST00000615522.1:57 BC103895:57 BC103896:57 BC103897:57 AY120869:57 ENST00000319340.7:-113 NM_152889.3:-113
 |annotation=5' UTR (NM_152889, exon 1 of 3)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_152889
 |nearest_refseq=NM_152889
+|nearest_transcripts=ENST00000615522.1:57 BC103895:57 BC103896:57 BC103897:57 AY120869:57 ENST00000319340.7:-113 NM_152889.3:-113
 |nearest_unigene=Hs.292375
 |peak_score=1