TSS: Rfhg 51437.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=BC034145:-18 AK130073:31 ENST00000493348.1:32 AK130271:-35 ENST00000305366.8:75 ENST00000493298.1:75 NM_014220.3:75 BC008442:76 LF351597:108 MA587174:108 M90657:115 BC010166:127 CU679647:176 CR456953:177 MB471893:-240
|annotation=promoter-TSS (NM_014220)
|annotation=promoter-TSS (NM_014220)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NR_109809
|nearest_promoter_id=NR_109809
|nearest_refseq=NR_046650
|nearest_refseq=NR_046650
|nearest_transcripts=AK130073:31 ENST00000493348.1:32 AK130271:-35 ENST00000305366.8:75 ENST00000493298.1:75 NM_014220.3:75 BC008442:76 LF351597:108 MA587174:108 M90657:115 BC010166:127 CU679647:176 CR456953:177 MB471893:-240
|nearest_unigene=Hs.549633
|nearest_unigene=Hs.549633
|peak_score=1
|peak_score=1

Revision as of 15:54, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_51437.1
Species:human
Chr:chr3
Start:149377724
End:149377724
Strand:-
Source datasetsPRJNA615891
ProtocolTIF-seq2
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3499237,EH38E2247169)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:BC034145:-18
GeneID:4071
HGNC/MGI_ID:HGNC:11853
UniProt_ID:Q8NE91
Nearer transcript ids and distances:
  • AK130073:31
  • ENST00000493348.1:32
  • AK130271:-35
  • ENST00000305366.8:75
  • ENST00000493298.1:75
  • NM_014220.3:75
  • BC008442:76
  • LF351597:108
  • MA587174:108
  • M90657:115
  • BC010166:127
  • CU679647:176
  • CR456953:177
  • MB471893:-240
view more...
Gene_name:TM4SF1-AS1
Gene_symbol:TM4SF1
Gene_synonyms:L6
Gene_source:HGNC:11853



TATA-Box annotation

Distance to TSS:-54
Nearest PromoterID:NR_109809
Entrez ID:100874091
Nearest Unigene:Hs.549633
Nearest Refseq:NR_046650
Nearest Ensembl:ENSG00000240541
Gene Name:TM4SF1-AS1
Gene Alias:-
Gene Type:ncRNA
CpG%:0.000000
GC%:1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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