TSS: Rfhg 53135.1: Difference between revisions

Revision as of 16:26, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_53135.1
Species:	human
Chr:	chr3

Start:	178558845
End:	178558867
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3521434,EH38E2261392)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001278911.2:0 NM_005832.5:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000455865.5:-15 ENST00000422927.1:18 ENST00000432997.5:-145 AF209747:-145 view more...

Gene_name:	KCNMB2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6
Nearest PromoterID:	NM_005832
Entrez ID:	10242
Nearest Unigene:	Hs.478368
Nearest Refseq:	NM_005832
Nearest Ensembl:	ENSG00000197584
Gene Name:	KCNMB2
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.260870
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001278911.2:0 NM_005832.5:0 ENST00000455865.5:-15 ENST00000422927.1:18 ENST00000432997.5:-145 AF209747:-145
 |annotation=promoter-TSS (NM_001278911)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005832
 |nearest_refseq=NM_005832
+|nearest_transcripts=ENST00000455865.5:-15 ENST00000422927.1:18 ENST00000432997.5:-145 AF209747:-145
 |nearest_unigene=Hs.478368
 |peak_score=1