TSS: Rfhg 53555.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000382489.3:389 NM_001163646.2:389 AJ437318:389 | |||
|annotation=promoter-TSS (NM_001163646) | |annotation=promoter-TSS (NM_001163646) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001163646 | |nearest_promoter_id=NM_001163646 | ||
|nearest_refseq=NM_182537 | |nearest_refseq=NM_182537 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.448004 | |nearest_unigene=Hs.448004 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000382489.3 AJ437318 | |transcript_name=ENST00000382489.3 NM_001163646.2 AJ437318 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_53555.1 | |tss_id=rfhg_53555.1 | ||
Revision as of 16:34, 12 November 2024
Basic information about the TSS
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| Source datasets | PRJNA4843412 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -391 |
|---|---|
| Nearest PromoterID: | NM_001163646 |
| Entrez ID: | 200909 |
| Nearest Unigene: | Hs.448004 |
| Nearest Refseq: | NM_182537 |
| Nearest Ensembl: | ENSG00000186090 |
| Gene Name: | HTR3D |
| Gene Alias: | 5HT3D |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.250000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.