TSS: Rfhg 56726.1: Difference between revisions

Revision as of 17:32, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_56726.1
Species:	human
Chr:	chr4

Start:	26320896
End:	26320916
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3560758,EH38E2287825)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RBPJ
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	99
Nearest PromoterID:	NM_203284
Entrez ID:	3516
Nearest Unigene:	Hs.479396
Nearest Refseq:	NM_005349
Nearest Ensembl:	ENSG00000168214
Gene Name:	RBPJ
Gene Alias:	AOS3\|CBF1\|IGKJRB\|IGKJRB1\|KBF2\|RBP-J\|RBPJK\|RBPSUH\|SUH\|csl
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.761905
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_015874)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_203284
 |nearest_refseq=NM_005349
+|nearest_transcripts=
 |nearest_unigene=Hs.479396
 |peak_score=1