TSS: Rfhg 57944.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000510663.6:0 ENST00000642900.1:0 ENST00000504757.2:0 NM_001267722.2:0 NM_006947.4:0 NR_151856.2:0 BC017057:0 BC056901:0 BC105583:0 BC040134:0 BX537991:0 BC046143:0 BC065018:0 AF038851:0 AF069765:0 EU794663:0 BC032609:0 AK225430:0 AK307397:0 AB590681:0 BC160164:0 AF077019:0 MP015132:0 ENST00000505314.2:25
|annotation=promoter-TSS (NM_006947)
|annotation=promoter-TSS (NM_006947)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_151856
|nearest_promoter_id=NR_151856
|nearest_refseq=NM_006947
|nearest_refseq=NM_006947
|nearest_transcripts=ENST00000505314.2:25
|nearest_unigene=Hs.237825
|nearest_unigene=Hs.237825
|peak_score=1
|peak_score=1
Line 33: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000510663.6 ENST00000642900.1 ENST00000504757.2 BC017057 BC056901 BC105583 BC040134 BX537991 BC046143 BC065018 AF038851 AF069765 EU794663 BC032609 AK225430 AK307397 AB590681 BC160164 AF077019
|transcript_name=ENST00000510663.6 ENST00000642900.1 ENST00000504757.2 NM_001267722.2 NM_006947.4 NR_151856.2 BC017057 BC056901 BC105583 BC040134 BX537991 BC046143 BC065018 AF038851 AF069765 EU794663 BC032609 AK225430 AK307397 AB590681 BC160164 AF077019 MP015132
|tss_cluster_detected=16
|tss_cluster_detected=16
|tss_id=rfhg_57944.1
|tss_id=rfhg_57944.1

Revision as of 17:55, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_57944.1
TSS ID(Version3):hg_47738.1
Species:human
Chr:chr4
Start:56467591
End:56467711
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|DRA000914|ENCODE|PRJNA401781|PRJNA548673
|PRJNA615891|PRJNA597322|DRA013844|PRJNA4843412|PRJDB5282
ProtocolCAGE|TSS_database|TSS-seq|oligo_capping|RAMPAGE
|ReCappable-seq|TIF-seq2|STRIPE-seq|SLIC_CAGE|NETCAGE|C1CAGE
TSS cluster detected*16

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3578892,EH38E2298660)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000510663.6:0
ENST00000642900.1:0
ENST00000504757.2:0
NM_001267722.2:0
NM_006947.4:0
NR_151856.2:0
BC017057:0
BC056901:0
BC105583:0
BC040134:0
BX537991:0
BC046143:0
BC065018:0
AF038851:0
AF069765:0
EU794663:0
BC032609:0
AK225430:0
AK307397:0
AB590681:0
BC160164:0
AF077019:0
MP015132:0
GeneID:6731
HGNC/MGI_ID:HGNC:11303
UniProt_ID:A0PJJ5 O76094 Q0D2M6 Q71V07 R4GNC1 V9HWK0
Nearer transcript ids and distances:
  • ENST00000505314.2:25
Gene_name:SRP72
Gene_symbol:SRP72
Gene_synonyms:
Gene_source:HGNC:11303



TATA-Box annotation

Distance to TSS:34
Nearest PromoterID:NR_151856
Entrez ID:6731
Nearest Unigene:Hs.237825
Nearest Refseq:NM_006947
Nearest Ensembl:ENSG00000174780
Gene Name:SRP72
Gene Alias:BMFF|BMFS1|HEL103
Gene Type:protein-coding
CpG%:0.100000
GC%:0.694215
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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