TSS: Rfhg 61821.1: Difference between revisions

Revision as of 19:10, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_61821.1
Species:	human
Chr:	chr4

Start:	121952012
End:	121952082
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000379645.8:0 NM_001130698.2:0 NM_001366479.2:0
GeneID:	7222
HGNC/MGI_ID:	HGNC:12335
UniProt_ID:	Q13507
Nearer transcript ids and distances:	AY865574:258

Gene_name:	TRPC3
Gene_symbol:	TRPC3
Gene_synonyms:
Gene_source:	HGNC:12335

TATA-Box annotation

Distance to TSS:	13
Nearest PromoterID:	NM_001130698
Entrez ID:	7222
Nearest Unigene:	Hs.150981
Nearest Refseq:	NM_003305
Nearest Ensembl:	ENSG00000138741
Gene Name:	TRPC3
Gene Alias:	SCA41\|TRP3
Gene Type:	protein-coding
CpG%:	0.057143
GC%:	0.591549
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000379645.8:0 NM_001130698.2:0 NM_001366479.2:0 AY865574:258
 |annotation=promoter-TSS (NM_001366479)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001130698
 |nearest_refseq=NM_003305
+|nearest_transcripts=AY865574:258
 |nearest_unigene=Hs.150981
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000379645.8
+|transcript_name=ENST00000379645.8 NM_001130698.2 NM_001366479.2
 |tss_cluster_detected=1
 |tss_id=rfhg_61821.1