TSS: Rfhg 64824.1: Difference between revisions

Revision as of 20:05, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_64824.1
Species:	human
Chr:	chr4

Start:	184850588
End:	184850614
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3664501,EH38E2349284)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF160765:-474 LQ070694:-474 MA405860:-474 MA644195:-474 MA732079:-474 MA801248:-474 MB407948:-474
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	MB407989:-475 ENST00000659446.1:-478 ENST00000656525.1:-478 NR_037510.1:-496 LG052538:-496 LP896347:-496 MB407967:-496 view more...

Gene_name:	MIR3945
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	509
Nearest PromoterID:	NR_037510
Entrez ID:	100500818
Nearest Unigene:
Nearest Refseq:	NR_037510
Nearest Ensembl:	ENSG00000266698
Gene Name:	MIR3945
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF160765:-474 LQ070694:-474 MA405860:-474 MA644195:-474 MA732079:-474 MA801248:-474 MB407948:-474 MB407989:-475 ENST00000659446.1:-478 ENST00000656525.1:-478 NR_037510.1:-496 LG052538:-496 LP896347:-496 MB407967:-496
 |annotation=TTS (NR_037510)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_037510
 |nearest_refseq=NR_037510
+|nearest_transcripts=MB407989:-475 ENST00000659446.1:-478 ENST00000656525.1:-478 NR_037510.1:-496 LG052538:-496 LP896347:-496 MB407967:-496
 |nearest_unigene=
 |peak_score=1