TSS: Rfhg 65075.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000307161.5:-66 NM_005958.4:-66 BC126297:-66 BC126299:-66 U14108:104 BC074946:118 BC074947:118 HQ258378:133 KJ891655:133 KR711668:133 KR711669:133 AB464620:134 EU432127:136 ENST00000509111.2:173
|annotation=promoter-TSS (NM_005958)
|annotation=promoter-TSS (NM_005958)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_005958
|nearest_promoter_id=NM_005958
|nearest_refseq=NM_005958
|nearest_refseq=NM_005958
|nearest_transcripts=U14108:104 BC074946:118 BC074947:118 HQ258378:133 KJ891655:133 KR711668:133 KR711669:133 AB464620:134 EU432127:136 ENST00000509111.2:173
|nearest_unigene=Hs.243467
|nearest_unigene=Hs.243467
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000307161.5 BC126297 BC126299
|transcript_name=ENST00000307161.5 NM_005958.4 BC126297 BC126299
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_65075.1
|tss_id=rfhg_65075.1

Revision as of 20:10, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_65075.1
Species:human
Chr:chr4
Start:186555501
End:186555501
Strand:-
Source datasetsEPD
ProtocolTSS_database
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3666053,EH38E2350434)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000307161.5:-66
NM_005958.4:-66
BC126297:-66
BC126299:-66
GeneID:4543
HGNC/MGI_ID:HGNC:7463
UniProt_ID:P48039
Nearer transcript ids and distances:
  • U14108:104
  • BC074946:118
  • BC074947:118
  • HQ258378:133
  • KJ891655:133
  • KR711668:133
  • KR711669:133
  • AB464620:134
  • EU432127:136
  • ENST00000509111.2:173
view more...
Gene_name:MTNR1A
Gene_symbol:MTNR1A
Gene_synonyms:MEL-1A-R
Gene_source:HGNC:7463



TATA-Box annotation

Distance to TSS:66
Nearest PromoterID:NM_005958
Entrez ID:4543
Nearest Unigene:Hs.243467
Nearest Refseq:NM_005958
Nearest Ensembl:ENSG00000168412
Gene Name:MTNR1A
Gene Alias:MEL-1A-R|MT1
Gene Type:protein-coding
CpG%:0.000000
GC%:1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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