TSS: Rfhg 65279.1: Difference between revisions

Revision as of 20:14, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_65279.1
Species:	human
Chr:	chr5

Start:	191551
End:	191561
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3668491,EH38E2351770)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC156515:-14 BC172511:-14
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF384937:-40 MA620514:-40 ENST00000328278.4:-56 NM_001080478.3:-56 view more...

Gene_name:	LRRC14B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	61
Nearest PromoterID:	NM_001080478
Entrez ID:	389257
Nearest Unigene:	Hs.103142
Nearest Refseq:	NM_001080478
Nearest Ensembl:	ENSG00000185028
Gene Name:	LRRC14B
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=BC156515:-14 BC172511:-14 LF384937:-40 MA620514:-40 ENST00000328278.4:-56 NM_001080478.3:-56
 |annotation=promoter-TSS (NM_001080478)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001080478
 |nearest_refseq=NM_001080478
+|nearest_transcripts=LF384937:-40 MA620514:-40 ENST00000328278.4:-56 NM_001080478.3:-56
 |nearest_unigene=Hs.103142
 |peak_score=1