TSS: Rfhg 6554.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF206554:456 MA442131:456
|annotation=intron (NM_001136140, intron 1 of 4)
|annotation=intron (NM_001136140, intron 1 of 4)
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NM_001366135
|nearest_promoter_id=NM_001366135
|nearest_refseq=NM_016308
|nearest_refseq=NM_016308
|nearest_transcripts=
|nearest_unigene=Hs.731647
|nearest_unigene=Hs.731647
|peak_score=1
|peak_score=1

Revision as of 20:18, 12 November 2024

Basic information about the TSS


TSS ID:rfhg_6554.1
Species:human
Chr:chr1
Start:47334199
End:47334229
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:pELS,CTCF-bound (EH38D2161877,EH38E1345199)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF206554:456
MA442131:456
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:CMPK1
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:424
    Nearest PromoterID:NM_001366135
    Entrez ID:51727
    Nearest Unigene:Hs.731647
    Nearest Refseq:NM_016308
    Nearest Ensembl:ENSG00000162368
    Gene Name:CMPK1
    Gene Alias:CK|CMK|CMPK|UMK|UMP-CMPK|UMPK
    Gene Type:protein-coding
    CpG%:0.166667
    GC%:0.709677
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):