TSS: Rfhg 6554.1: Difference between revisions

Revision as of 20:18, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_6554.1
Species:	human
Chr:	chr1

Start:	47334199
End:	47334229
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2161877,EH38E1345199)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF206554:456 MA442131:456
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CMPK1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	424
Nearest PromoterID:	NM_001366135
Entrez ID:	51727
Nearest Unigene:	Hs.731647
Nearest Refseq:	NM_016308
Nearest Ensembl:	ENSG00000162368
Gene Name:	CMPK1
Gene Alias:	CK\|CMK\|CMPK\|UMK\|UMP-CMPK\|UMPK
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.709677
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF206554:456 MA442131:456
 |annotation=intron (NM_001136140, intron 1 of 4)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001366135
 |nearest_refseq=NM_016308
+|nearest_transcripts=
 |nearest_unigene=Hs.731647
 |peak_score=1