TSS: Rfhg 67248.1: Difference between revisions

Revision as of 20:51, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_67248.1
Species:	human
Chr:	chr5

Start:	42992317
End:	42992333
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3698353,EH38E2369323)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	FLJ32255
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1008
Nearest PromoterID:	NR_104643
Entrez ID:	643977
Nearest Unigene:	Hs.535791
Nearest Refseq:	NR_104643
Nearest Ensembl:
Gene Name:	FLJ32255
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.125000
GC%:	0.647059
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=non-coding (NR_104643, exon 1 of 2)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_104643
 |nearest_refseq=NR_104643
+|nearest_transcripts=
 |nearest_unigene=Hs.535791
 |peak_score=1