TSS: Rfhg 68877.1: Difference between revisions

Revision as of 21:19, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_68877.1
Species:	human
Chr:	chr5

Start:	73684957
End:	73684957
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3717157,EH38E2381982)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC167854:-107
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AB384658:-108 AB082529:-119 BC171850:-119 BC157846:-119 ENST00000437974.5:-125 ENST00000426542.6:-125 view more...

Gene_name:	ARHGEF28
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	58799
Nearest PromoterID:	NM_001177693
Entrez ID:	64283
Nearest Unigene:	Hs.482521
Nearest Refseq:	NM_001080479
Nearest Ensembl:	ENSG00000214944
Gene Name:	ARHGEF28
Gene Alias:	RGNEF\|RIP2\|p190RHOGEF
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=BC167854:-107 AB384658:-108 AB082529:-119 BC171850:-119 BC157846:-119 ENST00000437974.5:-125 ENST00000426542.6:-125
 |annotation=intron (NM_001177693, intron 2 of 35)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001177693
 |nearest_refseq=NM_001080479
+|nearest_transcripts=AB384658:-108 AB082529:-119 BC171850:-119 BC157846:-119 ENST00000437974.5:-125 ENST00000426542.6:-125
 |nearest_unigene=Hs.482521
 |peak_score=1