TSS: Rfhg 70833.1: Difference between revisions

Revision as of 21:56, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_70833.1
Species:	human
Chr:	chr5

Start:	110738141
End:	110738148
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3743233,EH38E2398230)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001303250.3:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000508781.5:-5 ENST00000513807.5:13 AK302326:13 view more...

Gene_name:	SLC25A46
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_001303250
Entrez ID:	91137
Nearest Unigene:	Hs.75639
Nearest Refseq:	NM_138773
Nearest Ensembl:	ENSG00000164209
Gene Name:	SLC25A46
Gene Alias:	HMSN6B
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001303250.3:0 ENST00000508781.5:-5 ENST00000513807.5:13 AK302326:13
 |annotation=promoter-TSS (NR_138151)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001303250
 |nearest_refseq=NM_138773
+|nearest_transcripts=ENST00000508781.5:-5 ENST00000513807.5:13 AK302326:13
 |nearest_unigene=Hs.75639
 |peak_score=1