TSS: Rfhg 73156.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000539533.3:148 ENST00000623466.1:148 AF217751:148 LP896356:148 NR_001280.1:151 AF152527:151 | |||
|annotation=promoter-TSS (NR_001280) | |annotation=promoter-TSS (NR_001280) | ||
|ccre_category=DNase-H3K4me3 | |ccre_category=DNase-H3K4me3 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_001280 | |nearest_promoter_id=NR_001280 | ||
|nearest_refseq=NR_001280 | |nearest_refseq=NR_001280 | ||
|nearest_transcripts=NR_001280.1:151 AF152527:151 | |||
|nearest_unigene=Hs.284307 | |nearest_unigene=Hs.284307 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000539533.3 ENST00000623466.1 AF217751 | |transcript_name=ENST00000539533.3 ENST00000623466.1 AF217751 LP896356 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_73156.1 | |tss_id=rfhg_73156.1 | ||
Revision as of 22:39, 12 November 2024
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | DNase-H3K4me3,CTCF-bound (EH38D3767902,EH38E2414597) |
|---|---|
| Category: | DNase-H3K4me3 |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -151 |
|---|---|
| Nearest PromoterID: | NR_001280 |
| Entrez ID: | 54661 |
| Nearest Unigene: | Hs.284307 |
| Nearest Refseq: | NR_001280 |
| Nearest Ensembl: | ENSG00000255622 |
| Gene Name: | PCDHB17P |
| Gene Alias: | ME4|PCDH-psi1|PCDHB17 |
| Gene Type: | pseudo |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.