TSS: Rfhg 74159.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF343619:40 MA579196:40 LF343618:132 MA579195:132
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=dELS
|ccre_category=dELS
Line 25: Line 26:
|nearest_promoter_id=NR_105061
|nearest_promoter_id=NR_105061
|nearest_refseq=NR_105061
|nearest_refseq=NR_105061
|nearest_transcripts=LF343618:132 MA579195:132
|nearest_unigene=Hs.570892
|nearest_unigene=Hs.570892
|peak_score=1
|peak_score=1

Revision as of 22:57, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_74159.1
Species:human
Chr:chr5
Start:150488832
End:150488850
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS,CTCF-bound (EH38D3776553,EH38E2421054)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF343619:40
MA579196:40
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF343618:132
  • MA579195:132
view more...
Gene_name:NDST1-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-2849
Nearest PromoterID:NR_105061
Entrez ID:102546298
Nearest Unigene:Hs.570892
Nearest Refseq:NR_105061
Nearest Ensembl:ENSG00000254333
Gene Name:NDST1-AS1
Gene Alias:-
Gene Type:ncRNA
CpG%:0.000000
GC%:0.631579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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