TSS: Rfhg 75138.1: Difference between revisions

Revision as of 23:15, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_75138.1
Species:	human
Chr:	chr5

Start:	160685441
End:	160685447
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3785151,EH38E2426913)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001366658.2:50
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000642502.1:56 ENST00000326831.7:56 AK025130:181 view more...

Gene_name:	ATP10B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-53
Nearest PromoterID:	NM_001366658
Entrez ID:	23120
Nearest Unigene:	Hs.109358
Nearest Refseq:	NM_025153
Nearest Ensembl:	ENSG00000118322
Gene Name:	ATP10B
Gene Alias:	ATPVB
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.285714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001366658.2:50 ENST00000642502.1:56 ENST00000326831.7:56 AK025130:181
 |annotation=promoter-TSS (NM_001366658)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001366658
 |nearest_refseq=NM_025153
+|nearest_transcripts=ENST00000642502.1:56 ENST00000326831.7:56 AK025130:181
 |nearest_unigene=Hs.109358
 |peak_score=1