TSS: Rfhg 76456.1: Difference between revisions

Revision as of 23:39, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_76456.1
Species:	human
Chr:	chr5

Start:	178205010
End:	178205026
Strand:	-

Source datasets

DBTSS

Protocol

TSS-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3799182,EH38E2436002)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF325683:6 MA561260:6
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF325684:314 MA561261:314 view more...

Gene_name:	HNRNPAB
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	485
Nearest PromoterID:	NM_031266
Entrez ID:	3182
Nearest Unigene:	Hs.591731
Nearest Refseq:	NM_004499
Nearest Ensembl:	ENSG00000197451
Gene Name:	HNRNPAB
Gene Alias:	ABBP1\|HNRPAB
Gene Type:	protein-coding
CpG%:	0.062500
GC%:	0.588235
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF325683:6 MA561260:6 LF325684:314 MA561261:314
 |annotation=exon (NM_004499, exon 2 of 7)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_031266
 |nearest_refseq=NM_004499
+|nearest_transcripts=LF325684:314 MA561261:314
 |nearest_unigene=Hs.591731
 |peak_score=1