TSS: Rfhg 78075.1: Difference between revisions

Revision as of 00:09, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_78075.1
Species:	human
Chr:	chr6

Start:	12296455
End:	12296473
Strand:	+

Source datasets

FANTOM5|ENCODE

Protocol

CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3813909,EH38E2446607)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	EDN1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6103
Nearest PromoterID:	NM_001955
Entrez ID:	1906
Nearest Unigene:	Hs.511899
Nearest Refseq:	NM_001955
Nearest Ensembl:	ENSG00000078401
Gene Name:	EDN1
Gene Alias:	ARCND3\|ET1\|HDLCQ7\|PPET1\|QME
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.473684
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_001955, exon 5 of 5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001955
 |nearest_refseq=NM_001955
+|nearest_transcripts=
 |nearest_unigene=Hs.511899
 |peak_score=1