TSS: Rfhg 80461.1: Difference between revisions

Revision as of 00:52, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_80461.1
Species:	human
Chr:	chr6

Start:	31186395
End:	31186408
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3830969,EH38E2458966)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_152834.1:78 NR_152829.1:78 NR_152838.1:78 NR_152833.1:78 NR_152828.1:78 NR_152837.1:78 NR_152830.1:78 NR_152836.1:78 NR_026816.2:78 NR_152839.1:78 NR_152832.1:78 NR_152831.1:78 NR_152835.1:78 LC027945:78 LC027946:78 LC050979:78 LC050980:78 LC050981:78 LC050982:78 LC050983:78 LC050984:78 LC050985:78 LC050986:78 LC050987:78 LC050988:78 LC050989:78 LC050990:78 LC050991:78
GeneID:	100130889
HGNC/MGI_ID:	HGNC:17203
UniProt_ID:
Nearer transcript ids and distances:	KY781167:193

Gene_name:	PSORS1C3
Gene_symbol:	PSORS1C3
Gene_synonyms:	NCRNA00196
Gene_source:	HGNC:17203

TATA-Box annotation

Distance to TSS:	-84
Nearest PromoterID:	NR_152836
Entrez ID:	100130889
Nearest Unigene:	Hs.670091
Nearest Refseq:	NM_001134284
Nearest Ensembl:
Gene Name:	PSORS1C3
Gene Alias:	NCRNA00196
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_152834.1:78 NR_152829.1:78 NR_152838.1:78 NR_152833.1:78 NR_152828.1:78 NR_152837.1:78 NR_152830.1:78 NR_152836.1:78 NR_026816.2:78 NR_152839.1:78 NR_152832.1:78 NR_152831.1:78 NR_152835.1:78 LC027945:78 LC027946:78 LC050979:78 LC050980:78 LC050981:78 LC050982:78 LC050983:78 LC050984:78 LC050985:78 LC050986:78 LC050987:78 LC050988:78 LC050989:78 LC050990:78 LC050991:78 KY781167:193
 |annotation=promoter-TSS (NR_026816)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_152836
 |nearest_refseq=NM_001134284
+|nearest_transcripts=KY781167:193
 |nearest_unigene=Hs.670091
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=LC027945 LC027946 LC050979 LC050980 LC050981 LC050982 LC050983 LC050984 LC050985 LC050986 LC050987 LC050988 LC050989 LC050990 LC050991
+|transcript_name=NR_152834.1 NR_152829.1 NR_152838.1 NR_152833.1 NR_152828.1 NR_152837.1 NR_152830.1 NR_152836.1 NR_026816.2 NR_152839.1 NR_152832.1 NR_152831.1 NR_152835.1 LC027945 LC027946 LC050979 LC050980 LC050981 LC050982 LC050983 LC050984 LC050985 LC050986 LC050987 LC050988 LC050989 LC050990 LC050991
 |tss_cluster_detected=1
 |tss_id=rfhg_80461.1