TSS: Rfhg 81407.1: Difference between revisions

Revision as of 01:10, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_81407.1
Species:	human
Chr:	chr6

Start:	33117379
End:	33117397
Strand:	+

Source datasets

DRA000914

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3832840,EH38E2460386)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	DQ585414:-388
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	HLA-DPB2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	4872
Nearest PromoterID:	NR_001435
Entrez ID:	3116
Nearest Unigene:	Hs.665450
Nearest Refseq:	NR_001435
Nearest Ensembl:	ENSG00000224557
Gene Name:	HLA-DPB2
Gene Alias:	DP2B\|DPB2\|DPbeta2\|HLA-DP2B
Gene Type:	pseudo
CpG%:	0.055556
GC%:	0.631579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=DQ585414:-388
 |annotation=intron (NR_001435, intron 2 of 4)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_001435
 |nearest_refseq=NR_001435
+|nearest_transcripts=
 |nearest_unigene=Hs.665450
 |peak_score=1