TSS: Rfhg 82190.1: Difference between revisions

Revision as of 01:25, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_82190.1
Species:	human
Chr:	chr6

Start:	36984924
End:	36984937
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3837135,EH38E2463797)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MTCH1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1621
Nearest PromoterID:	NR_130739
Entrez ID:	23787
Nearest Unigene:	Hs.485262
Nearest Refseq:	NM_014341
Nearest Ensembl:	ENSG00000137409
Gene Name:	MTCH1
Gene Alias:	CGI-64\|PIG60\|PSAP\|SLC25A49
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_130739, intron 1 of 11)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_130739
 |nearest_refseq=NM_014341
+|nearest_transcripts=
 |nearest_unigene=Hs.485262
 |peak_score=1