TSS: Rfhg 82407.1: Difference between revisions

Revision as of 01:29, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_82407.1
Species:	human
Chr:	chr6

Start:	39792972
End:	39792990
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3839948,EH38E2465850)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_015345.4:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000538976.5:7 ENST00000398904.6:28 AL833083:28 BC128388:100 view more...

Gene_name:	DAAM2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-16
Nearest PromoterID:	NM_015345
Entrez ID:	23500
Nearest Unigene:	Hs.357128
Nearest Refseq:	NM_015345
Nearest Ensembl:	ENSG00000146122
Gene Name:	DAAM2
Gene Alias:	dJ90A20A.1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.526316
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_015345.4:0 ENST00000538976.5:7 ENST00000398904.6:28 AL833083:28 BC128388:100
 |annotation=promoter-TSS (NM_015345)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_015345
 |nearest_refseq=NM_015345
+|nearest_transcripts=ENST00000538976.5:7 ENST00000398904.6:28 AL833083:28 BC128388:100
 |nearest_unigene=Hs.357128
 |peak_score=1