TSS: Rfhg 82710.1: Difference between revisions

Revision as of 01:34, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_82710.1
Species:	human
Chr:	chr6

Start:	42747048
End:	42747067
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3842868,EH38E2467954)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001318819.2:-61
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000614467.4:-90 D87077:-90 LF341662:-187 MA577239:-187 view more...

Gene_name:	BICRAL
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	70
Nearest PromoterID:	NM_001318819
Entrez ID:	23506
Nearest Unigene:	Hs.658033
Nearest Refseq:	NM_015349
Nearest Ensembl:	ENSG00000112624
Gene Name:	BICRAL
Gene Alias:	GLTSCR1L\|KIAA0240
Gene Type:	protein-coding
CpG%:	0.105263
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001318819.2:-61 ENST00000614467.4:-90 D87077:-90 LF341662:-187 MA577239:-187
 |annotation=promoter-TSS (NM_003192)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001318819
 |nearest_refseq=NM_015349
+|nearest_transcripts=ENST00000614467.4:-90 D87077:-90 LF341662:-187 MA577239:-187
 |nearest_unigene=Hs.658033
 |peak_score=1