TSS: Rfhg 86017.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000674575.1:0 ENST00000674933.1:0 ENST00000674778.1:0 ENST00000676442.1:0 ENST00000676037.1:0 ENST00000674532.1:0 ENST00000674657.1:0 ENST00000675991.1:0 ENST00000675009.1:0 ENST00000674744.1:0 ENST00000675606.1:0 ENST00000675426.1:0 ENST00000674783.1:0 ENST00000675523.1:0 ENST00000675552.1:0 ENST00000675714.1:0 ENST00000675004.1:0 ENST00000368941.2:0 ENST00000454215.6:0 ENST00000676435.1:0 ENST00000675887.1:0 ENST00000674644.1:0 ENST00000675284.1:0 ENST00000676136.1:0 ENST00000674956.1:0 ENST00000674641.1:0 ENST00000674569.1:0 ENST00000674930.1:0 ENST00000230124.8:0 ENST00000675772.1:0 ENST00000675115.1:0 ENST00000674614.1:0 ENST00000675973.1:0 ENST00000675681.1:0 ENST00000675847.1:0 ENST00000675096.1:0 ENST00000674649.1:0 ENST00000674571.1:0 ENST00000675311.1:0 ENST00000676021.1:0 ENST00000675831.1:0 ENST00000674557.1:0 ENST00000674884.1:0 ENST00000415980.2:0 ENST00000675153.1:0 NM_014845.6:0 BC041338:0 AK291671:0 AK293422:0 D87464:0 LF322305:0 MA557882:0 AK222732:0 ENST00000675726.1:-11 LF384629:-39 MA620206:-39 ENST00000675122.1:-44 ENST00000675994.1:84 ENST00000674830.1:132
|annotation=promoter-TSS (NM_001145128)
|annotation=promoter-TSS (NM_001145128)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_014845
|nearest_promoter_id=NM_014845
|nearest_refseq=NM_014845
|nearest_refseq=NM_014845
|nearest_transcripts=ENST00000675726.1:-11 LF384629:-39 MA620206:-39 ENST00000675122.1:-44 ENST00000675994.1:84 ENST00000674830.1:132
|nearest_unigene=Hs.529959
|nearest_unigene=Hs.529959
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000674575.1 ENST00000674933.1 ENST00000674778.1 ENST00000676442.1 ENST00000676037.1 ENST00000674532.1 ENST00000674657.1 ENST00000675991.1 ENST00000675009.1 ENST00000674744.1 ENST00000675606.1 ENST00000675426.1 ENST00000674783.1 ENST00000675523.1 ENST00000675552.1 ENST00000675714.1 ENST00000675004.1 ENST00000368941.2 ENST00000454215.6 ENST00000676435.1 ENST00000675887.1 ENST00000674644.1 ENST00000675284.1 ENST00000676136.1 ENST00000674956.1 ENST00000674641.1 ENST00000674569.1 ENST00000674930.1 ENST00000230124.8 ENST00000675772.1 ENST00000675115.1 ENST00000674614.1 ENST00000675973.1 ENST00000675681.1 ENST00000675847.1 ENST00000675096.1 ENST00000674649.1 ENST00000674571.1 ENST00000675311.1 ENST00000676021.1 ENST00000675831.1 ENST00000674557.1 ENST00000674884.1 ENST00000415980.2 ENST00000675153.1 BC041338 AK291671 AK293422 D87464 AK222732
|transcript_name=ENST00000674575.1 ENST00000674933.1 ENST00000674778.1 ENST00000676442.1 ENST00000676037.1 ENST00000674532.1 ENST00000674657.1 ENST00000675991.1 ENST00000675009.1 ENST00000674744.1 ENST00000675606.1 ENST00000675426.1 ENST00000674783.1 ENST00000675523.1 ENST00000675552.1 ENST00000675714.1 ENST00000675004.1 ENST00000368941.2 ENST00000454215.6 ENST00000676435.1 ENST00000675887.1 ENST00000674644.1 ENST00000675284.1 ENST00000676136.1 ENST00000674956.1 ENST00000674641.1 ENST00000674569.1 ENST00000674930.1 ENST00000230124.8 ENST00000675772.1 ENST00000675115.1 ENST00000674614.1 ENST00000675973.1 ENST00000675681.1 ENST00000675847.1 ENST00000675096.1 ENST00000674649.1 ENST00000674571.1 ENST00000675311.1 ENST00000676021.1 ENST00000675831.1 ENST00000674557.1 ENST00000674884.1 ENST00000415980.2 ENST00000675153.1 NM_014845.6 BC041338 AK291671 AK293422 D87464 LF322305 MA557882 AK222732
|tss_cluster_detected=6
|tss_cluster_detected=6
|tss_id=rfhg_86017.1
|tss_id=rfhg_86017.1

Revision as of 02:36, 13 November 2024

Basic information about the TSS

TSS ID:rfhg_86017.1
TSS ID(Version3):hg_69245.1
Species:human
Chr:chr6
Start:109691260
End:109691333
Strand:+
Source datasetsFANTOM5|EPD|PRJNA4843412|DRA013844|PRJNA615891|PRJDB5282
ProtocolCAGE|TSS_database|NETCAGE|SLIC_CAGE|C1CAGE
TSS cluster detected*6

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3884765,EH38E2493033)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000674575.1:0
ENST00000674933.1:0
ENST00000674778.1:0
ENST00000676442.1:0
ENST00000676037.1:0
ENST00000674532.1:0
ENST00000674657.1:0
ENST00000675991.1:0
ENST00000675009.1:0
ENST00000674744.1:0
ENST00000675606.1:0
ENST00000675426.1:0
ENST00000674783.1:0
ENST00000675523.1:0
ENST00000675552.1:0
ENST00000675714.1:0
ENST00000675004.1:0
ENST00000368941.2:0
ENST00000454215.6:0
ENST00000676435.1:0
ENST00000675887.1:0
ENST00000674644.1:0
ENST00000675284.1:0
ENST00000676136.1:0
ENST00000674956.1:0
ENST00000674641.1:0
ENST00000674569.1:0
ENST00000674930.1:0
ENST00000230124.8:0
ENST00000675772.1:0
ENST00000675115.1:0
ENST00000674614.1:0
ENST00000675973.1:0
ENST00000675681.1:0
ENST00000675847.1:0
ENST00000675096.1:0
ENST00000674649.1:0
ENST00000674571.1:0
ENST00000675311.1:0
ENST00000676021.1:0
ENST00000675831.1:0
ENST00000674557.1:0
ENST00000674884.1:0
ENST00000415980.2:0
ENST00000675153.1:0
NM_014845.6:0
BC041338:0
AK291671:0
AK293422:0
D87464:0
LF322305:0
MA557882:0
AK222732:0
GeneID:9896
HGNC/MGI_ID:HGNC:16873
UniProt_ID:A0A6Q8PF04 A0A6Q8PF27 A0A6Q8PF62 A0A6Q8PF70 A0A6Q8PF86 A0A6Q8PF90 A0A6Q8PFK7 A0A6Q8PG49 A0A6Q8PG59 A0A6Q8PG61 A0A6Q8PGB4 A0A6Q8PGC1 A0A6Q8PGL0 A0A6Q8PGM1 A0A6Q8PGP4 A0A6Q8PGW0 A0A6Q8PGW5 A0A6Q8PGY4 A0A6Q8PHA1 A0A6Q8PHB4 A0A6Q8PHC7 A0A6Q8PHH5 A0A6Q8PHK3 A0A6Q8PHM5 A0A6Q8PHP5 A8K6K6 B4DE18 H0Y6G7 Q5TCS4 Q5TCS5 Q92562
Nearer transcript ids and distances:
  • ENST00000675726.1:-11
  • LF384629:-39
  • MA620206:-39
  • ENST00000675122.1:-44
  • ENST00000675994.1:84
  • ENST00000674830.1:132
view more...
Gene_name:FIG4
Gene_symbol:FIG4
Gene_synonyms:ALS11 CMT4J SAC3 dJ249I4.1 hSac3
Gene_source:HGNC:16873



TATA-Box annotation

Distance to TSS:75
Nearest PromoterID:NM_014845
Entrez ID:9896
Nearest Unigene:Hs.529959
Nearest Refseq:NM_014845
Nearest Ensembl:ENSG00000112367
Gene Name:FIG4
Gene Alias:ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1
Gene Type:protein-coding
CpG%:0.041096
GC%:0.554054
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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