TSS: Rfhg 86506.1: Difference between revisions

Revision as of 02:45, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_86506.1
Species:	human
Chr:	chr6

Start:	116511996
End:	116512022
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3890230,EH38E2496766)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ895904:-300
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK315572:-323 AK094140:-326 BC032556:-351 ENST00000368599.4:-357 NM_153711.5:-357 view more...

Gene_name:	CALHM5
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	370
Nearest PromoterID:	NM_153711
Entrez ID:	254228
Nearest Unigene:	Hs.105081
Nearest Refseq:	NM_153711
Nearest Ensembl:	ENSG00000178033
Gene Name:	CALHM5
Gene Alias:	C6orf188\|FAM26E\|dJ493F7.3
Gene Type:	protein-coding
CpG%:	0.038462
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=KJ895904:-300 AK315572:-323 AK094140:-326 BC032556:-351 ENST00000368599.4:-357 NM_153711.5:-357
 |annotation=exon (NM_153711, exon 1 of 2)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_153711
 |nearest_refseq=NM_153711
+|nearest_transcripts=AK315572:-323 AK094140:-326 BC032556:-351 ENST00000368599.4:-357 NM_153711.5:-357
 |nearest_unigene=Hs.105081
 |peak_score=1