TSS: Rfhg 87370.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000367927.9:0 ENST00000425515.6:0 ENST00000392393.7:0 ENST00000674148.1:0 ENST00000450865.2:0 ENST00000448644.2:0 NR_173394.1:0 NR_173391.1:0 NR_173395.1:0 NR_173396.1:0 NR_173393.1:0 NR_173392.1:0 AK075110:0 AK314708:0 ENST00000414302.7:2 BC104416:6 BC104417:6 BC113022:6 BC113023:6 BC148317:6 AJ238982:21 ENST00000509351.5:66 ENST00000417437.6:66 ENST00000423615.6:66 ENST00000427187.6:66 ENST00000275223.7:66 ENST00000519686.6:66 AB435052:66 AB435053:66 AB435054:66 AB435055:66 AB435056:66 AB435057:66 AB435058:66 AB435059:66 AB435060:66 AB435061:66 ENST00000544102.1:425 | |||
|annotation=promoter-TSS (NM_001291702) | |annotation=promoter-TSS (NM_001291702) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_001368151 | |nearest_promoter_id=NM_001368151 | ||
|nearest_refseq=NM_018399 | |nearest_refseq=NM_018399 | ||
|nearest_transcripts=ENST00000414302.7:2 BC104416:6 BC104417:6 BC113022:6 BC113023:6 BC148317:6 AJ238982:21 ENST00000509351.5:66 ENST00000417437.6:66 ENST00000423615.6:66 ENST00000427187.6:66 ENST00000275223.7:66 ENST00000519686.6:66 AB435052:66 AB435053:66 AB435054:66 AB435055:66 AB435056:66 AB435057:66 AB435058:66 AB435059:66 AB435060:66 AB435061:66 ENST00000544102.1:425 | |||
|nearest_unigene=Hs.183656 | |nearest_unigene=Hs.183656 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000367927.9 ENST00000425515.6 ENST00000392393.7 ENST00000674148.1 ENST00000450865.2 ENST00000448644.2 AK075110 AK314708 | |transcript_name=ENST00000367927.9 ENST00000425515.6 ENST00000392393.7 ENST00000674148.1 ENST00000450865.2 ENST00000448644.2 NR_173394.1 NR_173391.1 NR_173395.1 NR_173396.1 NR_173393.1 NR_173392.1 AK075110 AK314708 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_87370.1 | |tss_id=rfhg_87370.1 | ||
Revision as of 03:01, 13 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3901877,EH38E2504107) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001368151 |
| Entrez ID: | 55350 |
| Nearest Unigene: | Hs.183656 |
| Nearest Refseq: | NM_018399 |
| Nearest Ensembl: | |
| Gene Name: | VNN3 |
| Gene Alias: | HSA238982 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.214286 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENST00000414302.7:2 BC104416:6 BC104417:6 BC113022:6 BC113023:6 BC148317:6 AJ238982:21 ENST00000509351.5:66 ENST00000417437.6:66 ENST00000423615.6:66 ENST00000427187.6:66 ENST00000275223.7:66 ENST00000519686.6:66 AB435052:66 AB435053:66 AB435054:66 AB435055:66 AB435056:66 AB435057:66 AB435058:66 AB435059:66 AB435060:66 AB435061:66 ENST00000544102.1:425" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.