TSS: Rfhg 8753.1: Difference between revisions

Revision as of 03:04, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_8753.1
Species:	human
Chr:	chr1

Start:	85580201
End:	85580223
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2191720,EH38E1363980)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF211939:-71 MA447516:-71
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CCN1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-549
Nearest PromoterID:	NM_001554
Entrez ID:	3491
Nearest Unigene:	Hs.8867
Nearest Refseq:	NM_001554
Nearest Ensembl:	ENSG00000142871
Gene Name:	CCN1
Gene Alias:	CYR61\|GIG1\|IGFBP10
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.391304
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF211939:-71 MA447516:-71
 |annotation=promoter-TSS (NM_001554)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001554
 |nearest_refseq=NM_001554
+|nearest_transcripts=
 |nearest_unigene=Hs.8867
 |peak_score=1