TSS: Rfhg 90201.1: Difference between revisions

Revision as of 03:54, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_90201.1
Species:	human
Chr:	chr6

Start:	167815933
End:	167815949
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3932145,EH38E2525200)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	AFDN
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-10623
Nearest PromoterID:	NM_001366320
Entrez ID:	4301
Nearest Unigene:	Hs.614974
Nearest Refseq:	NM_005936
Nearest Ensembl:	ENSG00000130396
Gene Name:	AFDN
Gene Alias:	AF6\|MLL-AF6\|MLLT4\|l-afadin
Gene Type:	protein-coding
CpG%:	0.062500
GC%:	0.470588
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001366320
 |nearest_refseq=NM_005936
+|nearest_transcripts=
 |nearest_unigene=Hs.614974
 |peak_score=1