TSS: Rfhg 92729.1: Difference between revisions

Revision as of 04:39, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_92729.1
Species:	human
Chr:	chr7

Start:	27156578
End:	27156591
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3957942,EH38E2542629)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF362366:-7 MA597943:-7
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC140401:33 BC148692:33 AB463748:33 BC061916:-63 ENST00000242159.5:-84 NM_006896.4:-84 AF026397:-86 LF362365:115 MA597942:115 LF362367:-376 MA597944:-376 view more...

Gene_name:	HOXA7
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	91
Nearest PromoterID:	NM_006896
Entrez ID:	3204
Nearest Unigene:	Hs.660918
Nearest Refseq:	NM_006896
Nearest Ensembl:	ENSG00000122592
Gene Name:	HOXA7
Gene Alias:	ANTP\|HOX1\|HOX1.1\|HOX1A
Gene Type:	protein-coding
CpG%:	0.076923
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF362366:-7 MA597943:-7 BC140401:33 BC148692:33 AB463748:33 BC061916:-63 ENST00000242159.5:-84 NM_006896.4:-84 AF026397:-86 LF362365:115 MA597942:115 LF362367:-376 MA597944:-376
 |annotation=promoter-TSS (NM_006896)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_006896
 |nearest_refseq=NM_006896
+|nearest_transcripts=BC140401:33 BC148692:33 AB463748:33 BC061916:-63 ENST00000242159.5:-84 NM_006896.4:-84 AF026397:-86 LF362365:115 MA597942:115 LF362367:-376 MA597944:-376
 |nearest_unigene=Hs.660918
 |peak_score=1