TSS: Rfhg 94510.1: Difference between revisions

Revision as of 05:11, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_94510.1
Species:	human
Chr:	chr7

Start:	48088690
End:	48088717
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3976836,EH38E2555757)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001287428.2:0 NM_001362774.2:0 NM_001287426.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000457596.5:10 ENST00000432131.5:-29 ENST00000331803.8:-46 BC007348:-46 ENST00000416681.5:-62 view more...

Gene_name:	UPP1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	100
Nearest PromoterID:	NM_001287426
Entrez ID:	7378
Nearest Unigene:	Hs.488240
Nearest Refseq:	NM_003364
Nearest Ensembl:	ENSG00000183696
Gene Name:	UPP1
Gene Alias:	UDRPASE\|UP\|UPASE\|UPP
Gene Type:	protein-coding
CpG%:	0.074074
GC%:	0.678571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001287428.2:0 NM_001362774.2:0 NM_001287426.2:0 ENST00000457596.5:10 ENST00000432131.5:-29 ENST00000331803.8:-46 BC007348:-46 ENST00000416681.5:-62
 |annotation=promoter-TSS (NM_001287429)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001287426
 |nearest_refseq=NM_003364
+|nearest_transcripts=ENST00000457596.5:10 ENST00000432131.5:-29 ENST00000331803.8:-46 BC007348:-46 ENST00000416681.5:-62
 |nearest_unigene=Hs.488240
 |peak_score=1