TSS: Rfhg 94555.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000297001.7:0 NM_001161834.3:0 | |||
|annotation=promoter-TSS (NM_001161834) | |annotation=promoter-TSS (NM_001161834) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001161834 | |nearest_promoter_id=NM_001161834 | ||
|nearest_refseq=NM_001161834 | |nearest_refseq=NM_001161834 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.99248 | |nearest_unigene=Hs.99248 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000297001.7 | |transcript_name=ENST00000297001.7 NM_001161834.3 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_94555.1 | |tss_id=rfhg_94555.1 | ||
Revision as of 05:11, 13 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -224 |
|---|---|
| Nearest PromoterID: | NM_001161834 |
| Entrez ID: | 100130988 |
| Nearest Unigene: | Hs.99248 |
| Nearest Refseq: | NM_001161834 |
| Nearest Ensembl: | ENSG00000164500 |
| Gene Name: | SPATA48 |
| Gene Alias: | C7orf72 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.440000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.