TSS: Rfhg 94604.1: Difference between revisions

Revision as of 05:12, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_94604.1
Species:	human
Chr:	chr7

Start:	50450436
End:	50450461
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3978340,EH38E2556630)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AL137474:175
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	FIGNL1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-42
Nearest PromoterID:	NM_001287495
Entrez ID:	63979
Nearest Unigene:	Hs.137516
Nearest Refseq:	NM_022116
Nearest Ensembl:	ENSG00000132436
Gene Name:	FIGNL1
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.200000
GC%:	0.884615
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AL137474:175
 |annotation=promoter-TSS (NM_001346564)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001287495
 |nearest_refseq=NM_022116
+|nearest_transcripts=
 |nearest_unigene=Hs.137516
 |peak_score=1