TSS: Rfhg 95601.1: Difference between revisions

Revision as of 05:30, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_95601.1
Species:	human
Chr:	chr7

Start:	76054851
End:	76054939
Strand:	+

Source datasets

DRA013844

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3990841,EH38E2564561)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	DQ576321:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	DQ402957:-23 ENST00000492663.1:-347 view more...

Gene_name:	MDH2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6789
Nearest PromoterID:	NM_001282404
Entrez ID:	4191
Nearest Unigene:	Hs.520967
Nearest Refseq:	NM_005918
Nearest Ensembl:	ENSG00000146701
Gene Name:	MDH2
Gene Alias:	EIEE51\|M-MDH\|MDH\|MGC:3559\|MOR1
Gene Type:	protein-coding
CpG%:	0.034091
GC%:	0.595506
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=DQ576321:0 DQ402957:-23 ENST00000492663.1:-347
 |annotation=exon (NM_001282403, exon 2 of 8)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001282404
 |nearest_refseq=NM_005918
+|nearest_transcripts=DQ402957:-23 ENST00000492663.1:-347
 |nearest_unigene=Hs.520967
 |peak_score=1