TSS: Rfhg 96340.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000417207.5:0 ENST00000477972.1:0 ENST00000380058.7:0 ENST00000222511.11:0 ENST00000439832.5:0 NM_001042717.3:0 NM_033107.4:0 AK095561:0 BC107714:0 CR933597:0 AK294325:0 BC144162:0 ENST00000257659.12:-4 AF351613:-4 LF206770:-5 MA442347:-5 LF357626:343 MA593203:343 LF357625:422 MA593202:422
|annotation=promoter-TSS (NM_033107)
|annotation=promoter-TSS (NM_033107)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_033107
|nearest_promoter_id=NM_033107
|nearest_refseq=NM_033107
|nearest_refseq=NM_033107
|nearest_transcripts=ENST00000257659.12:-4 AF351613:-4 LF206770:-5 MA442347:-5 LF357626:343 MA593203:343 LF357625:422 MA593202:422
|nearest_unigene=Hs.593547
|nearest_unigene=Hs.593547
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000417207.5 ENST00000477972.1 ENST00000380058.7 ENST00000222511.11 ENST00000439832.5 AK095561 BC107714 CR933597 AK294325 BC144162
|transcript_name=ENST00000417207.5 ENST00000477972.1 ENST00000380058.7 ENST00000222511.11 ENST00000439832.5 NM_001042717.3 NM_033107.4 AK095561 BC107714 CR933597 AK294325 BC144162
|tss_cluster_detected=10
|tss_cluster_detected=10
|tss_id=rfhg_96340.1
|tss_id=rfhg_96340.1

Revision as of 05:44, 13 November 2024

Basic information about the TSS

TSS ID:rfhg_96340.1
Species:human
Chr:chr7
Start:90346669
End:90346738
Strand:+
Source datasetsPRJNA4843412|DRA013844|PRJNA548673|PRJDB5282|PRJNA401781
|PRJNA615891
ProtocolNETCAGE|CAGE|ReCappable-seq|C1CAGE|RAMPAGE|SLIC_CAGE
|oligo_capping|TIF-seq2
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4000434,EH38E2570336)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000417207.5:0
ENST00000477972.1:0
ENST00000380058.7:0
ENST00000222511.11:0
ENST00000439832.5:0
NM_001042717.3:0
NM_033107.4:0
AK095561:0
BC107714:0
CR933597:0
AK294325:0
BC144162:0
GeneID:85865
HGNC/MGI_ID:HGNC:25106
UniProt_ID:A4D1E9 C9JEQ8 F8WCN4
Nearer transcript ids and distances:
  • ENST00000257659.12:-4
  • AF351613:-4
  • LF206770:-5
  • MA442347:-5
  • LF357626:343
  • MA593203:343
  • LF357625:422
  • MA593202:422
view more...
Gene_name:GTPBP10
Gene_symbol:GTPBP10
Gene_synonyms:DKFZP686A10121 FLJ38242 OBGH2
Gene_source:HGNC:25106



TATA-Box annotation

Distance to TSS:-13
Nearest PromoterID:NM_033107
Entrez ID:85865
Nearest Unigene:Hs.593547
Nearest Refseq:NM_033107
Nearest Ensembl:ENSG00000105793
Gene Name:GTPBP10
Gene Alias:ObgH2|UG0751c10
Gene Type:protein-coding
CpG%:0.086957
GC%:0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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