TSS: Rfhg 97178.1: Difference between revisions

Revision as of 06:00, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_97178.1
TSS ID(Version3):	hg_85097.1 hg_85098.1
Species:	human
Chr:	chr7

Start:	99325762
End:	99325814
Strand:	-

Source datasets

FANTOM5|PRJDB5282|PRJNA4843412|DRA013844

Protocol

CAGE|C1CAGE|NETCAGE

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4007213,EH38E2574827)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000671330.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000640784.1:-9 ENST00000638739.1:12 ENST00000640670.1:-12 ENST00000638785.1:176 view more...

Gene_name:	ARPC1A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-85
Nearest PromoterID:	NM_001190996
Entrez ID:	10552
Nearest Unigene:	Hs.124126
Nearest Refseq:	NM_006409
Nearest Ensembl:	ENSG00000241685
Gene Name:	ARPC1A
Gene Alias:	Arc40\|HEL-68\|HEL-S-307\|SOP2Hs\|SOP2L
Gene Type:	protein-coding
CpG%:	0.096154
GC%:	0.679245
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000671330.1:0 ENST00000640784.1:-9 ENST00000638739.1:12 ENST00000640670.1:-12 ENST00000638785.1:176
 |annotation=promoter-TSS (NM_001190996)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001190996
 |nearest_refseq=NM_006409
+|nearest_transcripts=ENST00000640784.1:-9 ENST00000638739.1:12 ENST00000640670.1:-12 ENST00000638785.1:176
 |nearest_unigene=Hs.124126
 |peak_score=1