TSS: Rfhg 99191.1: Difference between revisions

Revision as of 06:37, 13 November 2024

Basic information about the TSS

TSS ID:	rfhg_99191.1
Species:	human
Chr:	chr7

Start:	118185659
End:	118185661
Strand:	+

Source datasets

DBTSS

Protocol

TSS-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4022187,EH38E2585124)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LSM8
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1496
Nearest PromoterID:	NM_016200
Entrez ID:	51691
Nearest Unigene:	Hs.655046
Nearest Refseq:	NM_016200
Nearest Ensembl:	ENSG00000128534
Gene Name:	LSM8
Gene Alias:	NAA38
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_016200, exon 2 of 4)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_016200
 |nearest_refseq=NM_016200
+|nearest_transcripts=
 |nearest_unigene=Hs.655046
 |peak_score=1