TSS: Rfmm 10007.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENSMUST00000083033.3:1
|annotation=promoter-TSS (XR_004936766.1)
|annotation=promoter-TSS (XR_004936766.1)
|ccre_category=N
|ccre_category=N
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|nearest_promoter_id=XR_004936766.1
|nearest_promoter_id=XR_004936766.1
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=
|nearest_unigene=XR_004936766
|nearest_unigene=XR_004936766
|peak_score=1
|peak_score=1

Revision as of 09:43, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_10007.1
Species:mouse
Chr:chr1
Start:178464462
End:178464469
Strand:+
Source datasetsFANTOM5|DRA000914
ProtocolCAGE|CAGE_and_CAGEscan
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000083033.3:1
GeneID:115487650
HGNC/MGI_ID:MGI:5454182
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Gm24405
    Gene_symbol:Gm24405
    Gene_synonyms:
    Gene_source:MGI:5454182



    TATA-Box annotation

    Distance to TSS:-5
    Nearest PromoterID:XR_004936766.1
    Entrez ID:Gm24405
    Nearest Unigene:XR_004936766
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Gm24405
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.125000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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