TSS: Rfmm 100122.1: Difference between revisions

Revision as of 09:44, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_100122.1
Species:	mouse
Chr:	chr10

Start:	116644704
End:	116644716
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	DNase-H3K4me3 (EM10D2342484,EM10E0964762)
Category:	DNase-H3K4me3

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	4930579P08Rik
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	79552
Nearest PromoterID:	NR_131036.1
Entrez ID:	4930579P08Rik
Nearest Unigene:	NR_131036
Nearest Refseq:
Nearest Ensembl:
Gene Name:	4930579P08Rik
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.461538
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001033333.3, intron 13 of 24)
 |ccre_category=DNase-H3K4me3
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_131036.1
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NR_131036
 |peak_score=1