TSS: Rfmm 100138.1: Difference between revisions

Revision as of 09:45, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_100138.1
Species:	mouse
Chr:	chr10

Start:	116767757
End:	116767772
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D1190782,EM10E0488888)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Rab3ip
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	230
Nearest PromoterID:	XM_017313908.2
Entrez ID:	Rab3ip
Nearest Unigene:	NM_001003950
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Rab3ip
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.437500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (XM_006513548.5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_017313908.2
 |nearest_refseq=
+|nearest_transcripts=
 |nearest_unigene=NM_001003950
 |peak_score=1