TSS: Rfmm 100257.1: Difference between revisions

Revision as of 09:46, 13 November 2024

Basic information about the TSS

TSS ID:	rfmm_100257.1
Species:	mouse
Chr:	chr10

Start:	117526405
End:	117526422
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF224640:0 MA460217:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF224639:137 MA460216:137 DQ344919:186 LF224641:-194 MA460218:-194 LF224642:-251 MA460219:-251 LF224638:342 MA460215:342 view more...

Gene_name:	Mdm2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	11051
Nearest PromoterID:	XM_017313822.2
Entrez ID:	Mdm2
Nearest Unigene:	NM_001288586
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Mdm2
Gene Alias:
Gene Type:
CpG%:	0.058824
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF224640:0 MA460217:0 LF224639:137 MA460216:137 DQ344919:186 LF224641:-194 MA460218:-194 LF224642:-251 MA460219:-251 LF224638:342 MA460215:342
 |annotation=exon (NM_001288586.2, exon 11 of 11)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=XM_017313822.2
 |nearest_refseq=
+|nearest_transcripts=LF224639:137 MA460216:137 DQ344919:186 LF224641:-194 MA460218:-194 LF224642:-251 MA460219:-251 LF224638:342 MA460215:342
 |nearest_unigene=NM_001288586
 |peak_score=1