TSS: Rfmm 100264.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF224659:51 MA460236:51 LF224658:151 MA460235:151
|annotation=exon (XM_017313822.2, exon 1 of 7)
|annotation=exon (XM_017313822.2, exon 1 of 7)
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=XM_017313822.2
|nearest_promoter_id=XM_017313822.2
|nearest_refseq=
|nearest_refseq=
|nearest_transcripts=LF224658:151 MA460235:151
|nearest_unigene=NM_001288586
|nearest_unigene=NM_001288586
|peak_score=1
|peak_score=1

Revision as of 09:47, 13 November 2024

Basic information about the TSS

TSS ID:rfmm_100264.1
Species:mouse
Chr:chr10
Start:117534941
End:117534946
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF224659:51
MA460236:51
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF224658:151
  • MA460235:151
view more...
Gene_name:Mdm2
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:2521
Nearest PromoterID:XM_017313822.2
Entrez ID:Mdm2
Nearest Unigene:NM_001288586
Nearest Refseq:
Nearest Ensembl:
Gene Name:Mdm2
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.166667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfmm_100264.1&oldid=3397317"